function [waveVamp, waveVlat] = exp_roenne2012(varargin)
%EXP_ROENNE2012 Figures from Rønne et al. (2012)
% Usage: output = exp_roenne2012(flag)
%
% EXP_ROENNE2012(flag) reproduces the results for the figure given
% by flag from the Rønne et al. (2012) paper. Outputs are the ABR wave V
% amplitude and latency of all datapoints in that given figure.
%
% The following flags can be specified;
%
% 'plot' Plot the specified figure from Rønne et al. (2012). This is
% the default.
%
% 'noplot' Don't plot, only return data.
%
% 'plot2' Plot extra figures for all individual simulated points.
% Note that this creates lots of extra figures (3 for each
% simulated data point)
%
% 'redo' Recalculate the experiment results.
%
% 'cached' Use cached results. Default.
%
% 'fig5' Plot Fig. 5 (Rønne et al., 2012). Latency of simulated ABR
% wave V's compared to Neely et al. (1988) and Harte et al.
% (2009) reference data.
%
% 'fig6' Plot Fig. 6 (Rønne et al., 2012). Amplitude of simulated
% wave V compared to Elberling et al. (2010) reference data.
%
% 'fig7' Plot Fig. 7 (Rønne et al., 2012). Latency of simulated wave
% V compared to Elberling et al. (2010) reference data.
%
% Examples:
% ---------
%
% To display Figure 5 use :
%
% exp_roenne2012('fig5');
%
% To display Figure 6 use :
%
% exp_roenne2012('fig6');
%
% To display Figure 7 use :
%
% exp_roenne2012('fig7');
%
% References:
% C. Elberling, J. Calloe, and M. Don. Evaluating auditory brainstem
% responses to different chirp stimuli at three levels of stimulation. J.
% Acoust. Soc. Am., 128(1):215-223, 2010.
%
% J. Harte, G. Pigasse, and T. Dau. Comparison of cochlear delay
% estimates using otoacoustic emissions and auditory brainstem responses.
% J. Acoust. Soc. Am., 126(3):1291-1301, 2009.
%
% S. Neely, S. Norton, M. Gorga, and J. W. Latency of auditory brain-stem
% responses and otoacoustic emissions using tone-burst stimuli. J.
% Acoust. Soc. Am., 83(2):652-656, feb 1988.
%
% F. M. Rønne, T. Dau, J. Harte, and C. Elberling. Modeling auditory
% evoked brainstem responses to transient stimuli. The Journal of the
% Acoustical Society of America, 131(5):3903-3913, 2012. [1]http ]
%
% References
%
% 1. http://scitation.aip.org/content/asa/journal/jasa/131/5/10.1121/1.3699171
%
%
% ---------
%
% Please cite Rønne et al. (2012) and Zilany and Bruce (2007) if you use
% this model.
%
%
% Url: http://amtoolbox.sourceforge.net/data/amt-test/htdocs/amt-0.9.8/doc/experiments/exp_roenne2012.php
% Copyright (C) 2009-2015 Piotr Majdak and Peter L. Søndergaard.
% This file is part of AMToolbox version 0.9.8
%
% This program is free software: you can redistribute it and/or modify
% it under the terms of the GNU General Public License as published by
% the Free Software Foundation, either version 3 of the License, or
% (at your option) any later version.
%
% This program is distributed in the hope that it will be useful,
% but WITHOUT ANY WARRANTY; without even the implied warranty of
% MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
% GNU General Public License for more details.
%
% You should have received a copy of the GNU General Public License
% along with this program. If not, see <http://www.gnu.org/licenses/>.
definput.import={'amtcache'};
definput.flags.type={'missingflag','fig5','fig6','fig7'};
definput.flags.plot={'plot','noplot'};
[flags,keyvals] = ltfatarghelper({},definput,varargin);
if flags.do_missingflag
flagnames=[sprintf('%s, ',definput.flags.type{2:end-2}), ...
sprintf('%s or %s',definput.flags.type{end-1},definput.flags.type{end})];
error('%s: You must specify one of the following flags: %s.',upper(mfilename),flagnames);
end;
%% ------ FIG 5 -----------------------------------------------------------
if flags.do_fig5
waveVamp = 0;
stim_level = 40:10:100; % Default stimulus levels
[waveVlat, click_latency] = amtcache('get','fig5',flags.cachemode);
if isempty(waveVlat);
[click_amplitude, click_latency] = roenne2012click(stim_level);
waveVlat = roenne2012tonebursts(stim_level);
amtcache('set','fig5',waveVlat,click_latency);
end;
if flags.do_plot;
plot_roenne2012tonebursts(waveVlat,click_latency);
end ;
end;
%% ------ FIG 6 -----------------------------------------------------------
if flags.do_fig6;
stim_level = (20:20:60)+35.2;
% Default chirp numbers. 1 = click, 2 to 6 = chirp 1 to 5.
chirp_number = 1:6;
[waveVamp, waveVlat] = amtcache('get','fig6',flags.cachemode);
if isempty(waveVamp)
[waveVamp, waveVlat] = roenne2012chirp(stim_level, chirp_number);
amtcache('set','fig6',waveVamp,waveVlat);
end;
if flags.do_plot
plot_roenne2012chirp(waveVamp, waveVlat,'amponly');
end
end;
%% ------ FIG 7 -----------------------------------------------------------
if flags.do_fig7;
stim_level = (20:20:60)+35.2;
% Default chirp numbers. 1 = click, 2 to 6 = chirp 1 to 5.
chirp_number = 1:6;
[waveVamp, waveVlat] = amtcache('get','fig7',flags.cachemode);
if isempty(waveVamp)
[waveVamp, waveVlat] = roenne2012chirp(stim_level, chirp_number);
amtcache('set','fig7',waveVamp,waveVlat);
end;
if flags.do_plot
plot_roenne2012chirp(waveVamp, waveVlat,'latonly');
end
end;